Publications

PhD Thesis

Articles in Refereed Journals

2014

  • Jochem Liem and Bert Bredeweg. 2014. Establishing Learning Spaces as a Knowledge Construction Instrument to Acquire System Knowledge. Advances in Cognitive Systems. (Accepted)
  • Christiana Th. Nicolaou, Bert Bredeweg, Jochem Liem, Constantinos P. Constantinou (2014). Assessing Learner Constructed Conceptual Models. Science Education. (Submitted)

2013

  • Bert Bredeweg, Jochem Liem, Wouter Beek, Floris Linnebank, Jorge Gracia, Esther Lozano, Michael Wißner, René Bühling, Paulo Salles, Richard Noble, Andreas Zitek, Petya Borisova, David Mioduser. 2013. DynaLearn – An Intelligent Learning Environment for Learning Conceptual Knowledge. AI Magazine, 34(4), 46-65. (PDF)

2009

  • Jochem Liem and Bert Bredeweg. 2009. Collaborative capture and reuse of system knowledge. Ecological Informatics Ecological Informatics 4(5-6), 367-380 (PDF)
  • Bredeweg, B., Linnebank, F., Bouwer, A., and Liem, J., 2009. Garp3 – Workbench for Qualitative Modelling and Simulation. Ecological Informatics 4(5-6), 263-281.

2008

  • Bert Bredeweg, Paulo Salles, Anders Bouwer, Jochem Liem, Tim Nuttle, Eugenia Cioaca, Elena Nakova, Richard Noble, Ana Luiza Rios Caldas, Yordan Uzunov, Emilia Varadinova, Andreas Zitek. 2008. Towards a structured approach to building qualitative reasoning models and simulations. Ecological Informatics, (3)1: 1-12.

Papers in Conference Proceedings

2014

  • Bert Bredeweg, Christina Nicolaou, Jochem Liem, Constantinos Constantinou (2014). Towards Assessing And Grading Learner Created Conceptual Models. Proceedings of the 12th international conference of intelligent tutoring systems (ITS2014). (Accepted)
  • Michael Wißner, Floris Linnebank, Jochem Liem, Bert Bredeweg and Elisabeth André. Domain-Independent Question Generation and Adaptation using a Bayesian Network of the Learner’s Achievements. Proceedings of the 12th international conference of intelligent tutoring systems (ITS2014). (Accepted)

2013

  • Michael Wißner, Floris Linnebank, Jochem Liem, Bert Bredeweg and Elisabeth André (2013). Question Generation and Adaptation using a Bayesian Network of the Learner’s Achievements. Proceedings of the 16th International Conference on Artificial Intelligence (AIED2013), Springer Berlin Heidelberg, 7926, 729-732.

2010

  • Bredeweg, B., Liem, J., Beek, W., Salles, P., and Linnebank, F. (2010). Learning Spaces as Representational Scaffolds for Learning Conceptual Knowledge of System Behaviour. In Wolpers, M., Kirschner, P.A., Scheffel, M., Lindstaedt, S. and Dimitrova, V. (eds.). Lecture Notes in Computer Science, Volume 6383, 2010, DOI: 10.1007/978-3-642-16020-2. Sustaining TEL: From Innovation to Learning and Practice. 5th European Conference on Technology Enhanced Learning, EC-TEL 2010, p47-61, Barcelona, Spain, September 28 – October 1, 2010.
  • Bredeweg, B., Liem, J., Linnebank, F., Bühling, R., Wißner, M., Gracia del Río, J., Salles, P., Beek, W. and Gómez Pérez, A. (2010). DynaLearn: Architecture and Approach for Investigating Conceptual System Knowledge Acquisition. In V. Aleven, J. Kay and J. Mostow (Eds.): Intelligent Tutoring Systems 2010, Part II, pp. 272-274, LNCS 6095, Springer-Verlag.
  • Gracia, J., Liem, J., Lozano, E., Corcho, O., Trna, M., Gómez-Pérez, A., and Bredeweg, B. (2010). Semantic Techniques for Enabling Knowledge Reuse in Conceptual Modelling. In 9th International Semantic Web Conference (ISWC2010), Shanghai, China. Springer, volume 6497 of Lecture Notes in Computer Science, pages 82-97, November 2010.
  • Lozano, E., Gracia, J., Liem, J., Gómze-Pérez, A. and Bredeweg, B. (2011). Semantic Feedback for the Enrichment of Conceptual Models. The Sixth International Conference on Knowledge Capture 2011 (K-CAP), Banff, Alberta, Canada, 25-29 June 2011.
  • Bredeweg, B., Liem, J., Linnebank, F., Bühling, R., Wißner, M., Gracia del Río, J., Salles, P., Beek, W. and Gómez Pérez, A. (2010). DynaLearn: Architecture and Approach for Investigating Conceptual System Knowledge Acquisition. In V. Aleven, J. Kay and J. Mostow (Eds.): Intelligent Tutoring Systems 2010, Pittsburg, USA, June 14th – 18th, 2010. (Poster)

2007

  • Jochem Liem, Bert Bredeweg, Anders Bouwer, Floris Linnebank. Garp3 – Workbench for Qualitative Modelling and Simulation. The 19th Belgian-Dutch Conference on Artificial Intelligence (BNAIC 2007). pp. 435-436, 5-6 November, Utrecht, The Netherlands. Demo paper.
  • Bert Bredeweg, Anders Bouwer, Jelmer Jellema, Dirk Bertels, Floris Linnebank, Jochem Liem. Garp3 – A new Workbench for Qualitative Reasoning and Modelling. The Fourth International Conference on Knowledge Capture (K-CAP 2007), pp. 183-184, 28-31 October, 2007, Whistler, BC, Canada.
  • Jochem Liem and Bert Bredeweg. OWL and qualitative reasoning models. In KI 2006: Advances in Artificial Intelligence. 29th Annual German Conference on AI, KI 2006, Bremen, Germany, June 14-17, 2006. Freksa, Christian; Kohlhase, Michael; Schill, Kerstin (Eds.). LNAI 4314, pp. 33-48. ISBN: 978-3-540-69911-8. Springer-Verlag Berlin Heidelberg 2007. (PDF)

2006

  • Jochem Liem and Bert Bredeweg. OWL and qualitatative reasoning models. In 29th annual German Conference on Artificial Intelligence (KI 2006), 14-19 June, 2006. C. Freksa, M. Kohlhase, and K. Schill (Eds.) (PDF)
  • Jochem Liem and Bert Bredeweg. OWL and qualitative reasoning models. In Pierre-Yves Schobbens, Wim Vanhoof, and Gabriel Schwanen (Eds.): Proceedings of 18th BeNeLux Conference on Artificial Intelligence (BNAIC’06), pages 407-408, Namur, Belgium, 5-6 October 2006.

Workshops

2012

  • Michael Wißner, Wouter Beek, Esther Lozano, Gregor Mehlmann, Floris Linnebank, Jochem Liem, Markus Häring, René Bühling, Jorge Gracia, Bert Bredeweg, Elisabeth André (2012). Increasing Learners’ Motivation through Pedagogical Agents: The Cast of Virtual Characters in the DynaLearn ILE. Agents for Educational Games and Simulations, Springer Berlin Heidelberg, 2012, 7471, 151-165.

2010

2009

  • Jochem Liem, Floris E. Linnebank and Bert Bredeweg. Model Building Experiences using Garp3: Problems, Patterns and Debugging. 23rd International Workshop on Qualitative Reasoning (QR’09). Jure Zabkar and Ivan Bratko (eds.), pages 68-75, Ljubljana, Slovenia, 22-24 June 2009. (PDF)

2008

  • Jochem Liem, Hylke Buisman and Bert Bredeweg. Supporting Conceptual Knowledge Capture Through Automatic Modelling. Second International Workshop on the Induction of Process Models (IPM2008). Will Bridewell, Toon Calder, Ana Karla de Medeiros, Stefan Kramer, Mykola Pechenizkiy, Ljupco Todorovski (eds.), pages 37-44, Antwerp, Belgium, 15 September 2008. (Part of the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, ECML PKDD 2008) (PDF)
  • Jochem Liem, Hylke Buisman and Bert Bredeweg. Supporting Conceptual Knowledge Capture Through Automatic Modelling: A Preliminary Progress Report. 22nd International Workshop on Qualitative Reasoning. Elizabeth Bradley and Luise Travé-Massuyès (eds.), pages 83-87, Boulder, Colorado, USA, 24-26 June 2008. (PDF)
  • Jochem Liem and Bert Bredeweg. Collaborative Capture and Reuse of Environmental Knowledge. Workshop: Qualitative models for Sustainability. Proceedings of the International Congress on Environmental Modelling and Software Integrating Sciences and Information Technology for Environmental Assessment and Decision Making (iEMSs 2008). M. Sànchez-Marrè, J. Béjar, J. Comas, A. Rizzoli and G. Guariso (Eds.). Pages 1984-1986, Barcelona, Catalonia, 7-10 July 2008. (PDF)
  • Jochem Liem, Hylke Buisman and Bert Bredeweg. Supporting Conceptual Knowledge Capture Through Automatic Modelling. Proceedings of the Workshop on Model-Based Systems (MBS 2008). Bernhard Peischl, Neal Snooke, Gerald Steinbauer, and Cees Witteveen (eds.), pages 13-17, Patras, Greece, 22nd of July 2008. (Part of the 18th European Conference on Artificial Intelligence, ECAI2008) (PDF)

2007

  • Jochem Liem, Anders Bouwer, Bert Bredeweg. Collaborative Conceptual Modeling: Share, Search and Reuse. 21st International Workshop on Qualitative Reasoning (QR’07). Chris Price (eds.), pages 71-78, Aberystwyth, Wales, U.K., 26-28 June, 2007. (PDF)

2006

  • Rinke Hoekstra, Jochem Liem, Bert Bredeweg and Joost Breuker. Requirements for Representing Situations. Proceedings of the OWLED’06 workshop on OWL: Experiences and Directions. In Bernardo Cuenca Grau and Pascal Hitzler and Conor Shankey and Evan Wallace (Eds.): CEUR Workshop Proceedings 216. Athens, Georgia, USA, November 10-11 2006. (PDF)
  • B. Bredeweg, A. Bouwer, J. Jellema, D. Bertels, F. Linnebank, and J. Liem. Garp3 – A new Workbench for Qualitative Reasoning and Modelling. 20th International Workshop on Qualitative Reasoning (QR-06), C. Bailey-Kellogg and B. Kuipers (eds), pages 21-28, Hanover, New Hampshire, USA, 10-12 July 2006. (PDF)
  • B. Bredeweg, P. Salles, A. Bouwer, and J. Liem. Towards a Structured Approach to Qualitative Modelling. 20th International Workshop on Qualitative Reasoning (QR-06), Bailey-Kellogg, C., and Kuipers, B. (eds), pages 29-36, Hanover, New Hampshire, USA, 10-12 July 2006. (PDF)

Technical Reports

2012 (DynaLearn)

  • Bredeweg, B. (editor), with contributions from: Beek, W., Borisova, P., Corcho, P., Gracia del Río, J., Leiba, M., Liem, J., Mioduser, D., Noble, R., Salles, P., Wißner, M. & Zitek, A. (2012). Final project report. DynaLearn, EC FP7 STREP project 231526, Deliverable D1.4.
  • Corcho, O., Bredeweg, B., Liem, J., Lozano, E., Gracia, J., Ibarrola, A. & Villazón, B. (2012). Technology into Practice. DynaLearn, EC FP7 STREP project 231526, Deliverable D8.5.
  • Mioduser, D., Zuzovsky, R., Salles, P., Souza, A., Portella, A., Braga, E., Wilhelms, L., Pereira Resende, M., Morison, G., Assumpção da Costa e Silva, P., Gontijo de Sá, I., Pires, L., Simões, A., Noble, R., Cowx, I., Borisova, P., Liem, J., Uzunov, Y., Zurel, D., Leiba, M., Benayahu, H., Nachmias, R., Ram J., Zitek, A., Poppe, M. & Stelzhammer, M. (2012). Final report on DynaLearn evaluation studies. DynaLearn, EC FP7 STREP project 231526, Deliverable D7.4.
  • Borisova, P., Liem, J., and Uzonov, Y. (2012). CLGE evaluation of DynaLearn final software. DynaLearn, EC FP7 STREP project 231526, Deliverable D7.3.3.
  • Lozano, E., Gracia, J., Collarana, D., Corcho, O., Gómez-Pérez, A., Villazón, B., Latour, S., and Liem, J. (2011).Model-based and memory-based collaborative filtering algorithms for complex knowledge models. DynaLearn, EC FP7 STREP project 231526, Deliverable D4.3.

2011 (DynaLearn)

2010 (DynaLearn)

  • Gracia, J., Trna, M., Lozano, E., Nguyen, T.T., Gómez-Pérez, A., Montaña, C. and Liem, J. (2010). Semantic repository and ontology mapping. DynaLearn, EC FP7 STREP project 231526, Deliverable D4.1.
  • Linnebank, F., Liem, J., and Bredeweg, B. (2010). Question generation and answering. DynaLearn, EC FP7 STREP project 231526, Deliverable D3.3.
  • Lozano, E., Gracia, J., Gómez-Pérez, A., Liem, J., van Weelden, C. and Bredeweg, B. (2010). Ontology-based feedback on model quality. DynaLearn, EC FP7 STREP project 231526, Deliverable D4.2.
  • Wißner, M., Häring, M., Mehlmann, G., Bühling, R., Milosevic, U., Liem, J., Linnebank, F., Beek, W., Bredeweg, B. and André, E. (2010). Basic Tutorial Tactics for Virtual Agents. DynaLearn, EC FP7 STREP project 231526, Deliverable D5.2.
  • Wißner, M., Häring, M., Bühling, R., Beek, W., Linnebank, F., Liem, J., Bredeweg, B., André, E. (2010). Basic Help and Teachable Agent. DynaLearn, EC FP7 STREP project 231526, Deliverable D5.3.
  • Liem, J., Beek, W., Linnebank, F., & Bredeweg, B. (2010). API for data and knowledge exchangeDynaLearn, EC FP7 STREP project 231526, Deliverable D3.2.
  • Liem, J., Beek, W. and Bredeweg, B. (2010). Multi use level workbenchDynaLearn, EC FP7 STREP project 231526, Deliverable D3.1.

2009 (DynaLearn)

2007 (NaturNet-Redime)

  • Liem, J., Linnebank, F., Bouwer, A., Bredeweg, B. and Bakker, E. 2007. D4.4 Intelligent help system Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Milestone D4.4. (PDF)
  • Bouwer, A., Liem, J., Linnebank, F., and Bredeweg, B. 2007. D4.2.3 Analysis of frequently asked questions and improvements of the Garp3 workbench Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Milestone D4.2.3. (PDF)
  • Liem, J., Bouwer, A., Bredeweg, B., Salles, P. and Bakker, B. 2007. 3rd NNR user group workshop on Qualitative Reasoning and Modelling, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Milestone M7.2.3. (PDF)

2006 (NaturNet-Redime)

  • Petr Horak and Jochem Liem, 2006. Release 2 of NaturNet-Redime Portal, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D3.4.2.
  • J. Liem, A. Bouwer, B. Bredeweg, E. Bakker and P. Salles, 2006. Third NNR user group workshop on Qualitative Reasoning and Modelling, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report M7.2.3.
  • J. Liem, A. Bouwer, and B. Bredeweg, 2006. Collaborative QR model building and simulation workbench, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D4.3.
  • J. Liem, B. Bredeweg, and A. Bouwer, 2006. QR model-fragment library standard Redime, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D2.3.2.
  • E. Bakker, A. Bouwer, J. Liem, and B. Bredeweg, 2006. User Manual for Collaborative QR model building and simulation workbench, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D4.2.2.
  • Nuttle, T., Liem, J., Bouwer, A., Bredeweg, B., and Salles, P. 2006. 2nd NNR user group workshop on Qualitative Reasoning and Modelling, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Milestone M7.2.2. (PDF)
  • Bouwer, A., Bredeweg, B., Liem, J., and Salles, P. 2006. 1st NNR user group workshop on using QR technology, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Milestone M7.2.1. (PDF)
  • Bredeweg, B., Bouwer, A., and Liem, J. 2006. Single-user QR model building and simulation workbench, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D4.1. (PDF)
  • Liem, J., and Bredeweg, B., 2006. Document Type Definition (DTD) for QR Model Fragments, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D2.3.1. (PDF)
  • Bredeweg, B., Bouwer, A., Liem, J., and Salles, P. 2006. Curriculum for learning about QR modelling, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D6.9.1. (PDF)

2005 (NaturNet-Redime)

  • Bredeweg, B., Salles, P., Bouwer, A., and Liem, J. 2005. Framework for conceptual QR description of case studies, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D6.1. (PDF)
  • Bouwer, A., Liem, J., and Bredeweg, B. 2005. User Manual for Single-User Version of QR Workbench, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D4.2.1. (PDF)
  • J. Liem, B. Bredeweg and A. Bouwer, 2005. QR Subportal First Release, Naturnet-Redime, STREP project co-funded by the European Commission within the Sixth Framework Programme (2002-2006), Project no. 004074, Project Deliverable Report D3.3. (PDF)

Abstracts

2012

2011

2010

2006

  • Bredeweg, B., Salles, P., Bouwer, A., Liem, J., Nuttle, T., Cioaca, E., Nakova, E., Noble, R., Caldas, A.L.R., Uzunov, Y., Varadinova, E. and Zitek, A. (2006). Towards a Structured Approach to Qualitative Modelling. In Dreyfus, M., Jones, M. and Recknagel, F. (eds.). In Proceedings of the 5th International Conference on Ecological Informatics (ISEI5), abstract O35, Santa Barbara, CA, US, 4-6 December 2006.
  • Bredeweg, B., Bouwer, A., Jellema, J., Bertels, D., Linnebank, F. and Liem, J. (2006) Garp3 – A new Worksbench for Qualitative Reasoning and Modelling. In Dreyfus, M., Jones, M. and Recknagel, F. (eds.). In Proceedings of the 5th International Conference on Ecological Informatics (ISEI5), abstract P15, Santa Barbara, CA, US, 4-6 December 2006.

Other

2007

  • Jochem Liem, Floris Linnebank, Anders Bouwer and Bert Bredeweg. 2007. Final NNR Garp3 Modelling and Simulation Workbench Release. NaturNet-Redime newsletter, Number 6, pages 2-5, December, ISSN 1801-6480. (PDF)
  • Anders Bouwer, Jochem Liem, Floris Linnebank and Bert Bredeweg. 2007. New Release of the Garp3 Collaborative Workbench, NaturNet-Redime newsletter, Number 5, pages 2-3, April, ISSN 1801-6480. (PDF)
  • Jochem Liem and Bert Bredeweg. 2007. Troubleshooting Qualitative Models, NaturNet-Redime newsletter, Number 5, pages 4-5, April, ISSN 1801-6480. (PDF)

2006

  • Jochem Liem and Bert Bredeweg. 2006. Sharing and Reuse of Conceptual Models, Naturnet-Redime newsletter, Number 4, page 4-6, November, ISSN 1801-6480. (PDF)
  • Elinor Bakker, Jochem Liem and Bert Bredeweg. 2006. The Qualitative Reasoning and Modelling Portal, Naturnet-Redime Newsletter, Number 4, page 7-8, November, ISSN 1801-6480. (PDF)
  • Bert Bredeweg, Paulo Salles, Anders Bouwer, Elinor Bakker and Jochem Liem. 2006. Successful use of Garp3 by stakeholders, Naturnet-Redime Newsletter, Number 3, 10-12, November, ISSN 1801-6480. (PDF)
  • A. Bouwer, J. Liem, B. Bredeweg. 2006. Collaboration in the Qualitative Reasoning Workbench, Naturnet-Redime newsletter, Number 3, page 15-18, May, ISSN 1801-6480. (PDF)
  • B. Bredeweg, A. Bouwer, and J. Liem. 2006. Garp3 – Workbench for capturing conceptual knowledge, Naturnet-Redime newsletter, Number 2, page 2-4, January, ISSN 1801-6480. (PDF)
  • T. Nuttle, A.L. Rios Caldas, P. Salles, E. Nakova, E. Varadinova, Y. Uzunov, E. Cioaca, R. Noble, A. Zitek, B. Bredeweg, A. Bouwer, J. Liem, and M. Neumann. 2006. Progress in developing cognitive models of sustainability: case studies from European and Brazilian river basins, Naturnet-Redime newsletter, Number 2, page 12-14, January, ISSN 1801-6480. (PDF)

Master Thesis

  1. Jochem Liem. Qualitative Reasoning and the Web Ontology Language. Supervisor: Bert Bredeweg. May 2005. (PDF)
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